Foundations (12)

The intellectual claims behind the system.

Foundations 00 · March 2026

Foundation Zero: Why

The question that precedes architecture: why build a system that studies its own construction?

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Foundations 01 · March 2026

The Core Thesis

Human participation in knowledge work is irreplaceable. The system exists to find where.

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Foundations 02 · March 2026

The Library Theorem

A formal argument that externalized knowledge structures are necessary for institutional intelligence.

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Foundations 03 · March 2026

Institutional Intelligence

Intelligence as a property of institutions, not individuals. What it means for a system to know.

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Foundations 04 · March 2026

The Scientific Ecosystem

The niche structure of scientific knowledge production and where AI participation fits.

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Foundations 05 · March 2026

Externalization

If it is not written down, it did not happen. The discipline of making reasoning visible and auditable.

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Foundations 06 · March 2026

The Three-Axis Model

Projects, Patterns, Personas: the three axes that organize all work in the system.

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Foundations 07 · March 2026

Multi-Agent Coordination Topology

How multiple agents coordinate through shared state, boards, and index hierarchies.

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Foundations 08 · March 2026

Agent Mortality

An agent's context window is its lifespan. Design, decide, delegate. Never waste context on what a subagent can do.

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Foundations 09 · March 2026

Self-Modification

A system that studies its own operation and evolves its architecture through use.

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Foundations 10 · March 2026

Privacy Architecture

Privacy as an architectural property, not a policy overlay. What the system must never expose.

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Foundations 11 · March 2026

Origins

The intellectual lineage: from the Invisible College to a system that convenes knowledge work.

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Ontology (13)

What exists and how things relate at the most basic level.

Ontology 01 · March 2026

Objects

What exists: three axes (actor, method, domain), materials, four bundle types. Type/token, time, agency, normativity.

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Ontology 02 · March 2026

Relations

How things relate: one primitive (belongs-to), quality as the nature of belonging, reflexive closure, withdrawal without essence.

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Ontology 03 · March 2026

Notation

Layered formalism: sets, posets, categories. From entity sets through tag dimensions to Yoneda identity and situations as limits.

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Ontology 04 · March 2026

Three Correspondences (v1.2 — Relational Revision)

Filesystem, football league, Harvard mapped to the ontology. Relational revision resolving v1.1 gaps.

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Ontology 05 · March 2026

Perception and Memory

Extensions P1–P7: internal material, percept, perceptual method, representation, memory. Grounded in the apple scenario.

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Ontology 06 · March 2026

The AI Writing Scenario

Extensions P8–P11: expressive method, dispositional state, generative method, joint product. Person + LLM co-authoring.

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Ontology 07 · March 2026

Correspondence IV: HAAK

HAAK mapped to its own ontology. Axis assignments, compound assignments, constitutional scope analysis.

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Ontology 08 · March 2026

The Relational Ground

The philosophical motivation: from Harman’s OOO through Leibniz’s relational alternative to Badiou’s set-theoretic ontology.

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Ontology 09 · March 2026

The Situation Graph

Situations as the primitive unit of social knowledge. Relationships derived, never stored. Five-phase mapping engine pattern.

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Ontology 10 · March 2026

Relations Applied

Practical companion: epistemic gradient, materialization vs. evidence, extraction as situation. The system documents its own documentation.

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Ontology 11 · March 2026

Identity as Belonging

Identity as belonging. Identifiers are belongings with quality “identified-by,” namespaces are entities of type “registry.”

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Ontology 12 · March 2026

Situation Nesting

Situations at project scale play the domain role for sub-situations. Scale, acquisition, subsumption, materialization.

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Ontology 13 · March 2026

Governance as Situation

Governance is a situation, not an attribute. Decision processes, merge governance, authority as belonging with delegation chains.

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Architecture (41)

How the system is built.

Architecture 00 · March 2026

Seven Design Principles

Seven foundational design principles governing the system’s architecture.

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Architecture 01 · March 2026

Hierarchy Rationale

Directory hierarchy for types, frontmatter tags for cross-cutting domains. Why tree structure over flat.

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Architecture 02 · March 2026

Forkability

System layer is forkable/portable; data layer is instance-specific. Personas at the boundary.

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Architecture 04 · March 2026

Drift Resistance

The central unsolved problem: organizational invariants degrade when agents bypass the system.

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Architecture 05 · March 2026

Inscription Architecture

How agents receive instructions, match patterns, create and propagate policies.

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Architecture 06 · March 2026

Agent Architecture

Confidential materials and cross-scope isolation through scoping dimensions.

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Architecture 08 · March 2026

Encapsulation

The boundary between what an agent can see and what it cannot. Scope as architecture.

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Architecture 09 · March 2026

Recursive Index

The Library Theorem applied to the filesystem. Every index.md is one level of hierarchical indexing.

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Architecture 10 · March 2026

Read/Write Operations

Atomic read/write primitives. B-tree traversal through indices, the Self-Description Lemma.

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Architecture 11 · March 2026

Navigate, Don't Address

Paths are outputs of navigation, not inputs from reference docs. The index tree is the only address book.

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Architecture 14 · March 2026

Universal Indexing

Every directory gets indexed, no exceptions. Filenames are helpers; frontmatter is canonical.

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Architecture 15 · March 2026

Method Composability

Methods are composable primitives forming a directed labeled composition graph and a bipartite domain graph.

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Architecture 16 · March 2026

Traceability

Provenance chains, frontmatter carriers, source snapshots, and transcripts. Auditability built into the filesystem.

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Architecture 17 · March 2026

Documentation Commitment

The medium is .md and .yaml. Everything documented, documentation concise. The 500-line ceiling.

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Architecture 18 · March 2026

Agent Governance

General theory of agent patterns, policy creation, cooperation, and governance.

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Architecture 19 · March 2026

Agent Coordination

Multi-agent coordination through boards, agent registries, and subscriptions.

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Architecture 20 · March 2026

20 — Context Transport

How agents switch situations without losing state. Checkpoint, trace, engage — not a stack, a transport layer.

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Architecture 22 · March 2026

Entities and Belongings

Agent lifecycle: birth, operation, consolidation, death. Context window as lifespan.

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Architecture 23 · March 2026

Data Infrastructure

The data layer: databases, sync pipelines, and the relationship between local stores and external sources.

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Architecture 24 · March 2026

Branch Visibility and Access Control

Which branches an agent can see and how visibility is computed from the manifest.

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Architecture 25 · March 2026

Identity Resolution

Mapping external identifiers to canonical entities across email, phone, GitHub, ORCID, and agent sessions.

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Architecture 26 · March 2026

Domain Branches

Data as selectable domain branches: core, personal, work, reference. Manifest-driven installs.

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Architecture 27 · March 2026

Branch Universality

Every domain gets a branch. Branches are the universal unit of concurrent work.

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Architecture 28 · March 2026

28. Situational Awareness — Sessions Are Not Situations

Sessions are not situations. The ontological distinction that governs how agents perceive context.

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Architecture 29 · March 2026

29. Ontology Audit — March 2026

Infrastructure-wide audit of 41 databases and 4,535 markdown files against the relational situational ontology.

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Architecture 31 · March 2026

31. Agent Mailbox Protocol

Asynchronous message passing between agents. Dispatch, delivery, and the coordination layer.

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Architecture 32 · March 2026

32. Agent Lifecycle Manager

Birth, operation, consolidation, death. The mortality clock and lifecycle governance for agents.

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Architecture 33 · March 2026

33. The Constitutional Ledger

Append-only, content-addressed, hash-chained. Every governance act recorded with tamper evidence.

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Architecture 35 · March 2026

Agent Runner

The original Python agent runner specification. Replaced by Architecture 38.

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Architecture 36 · March 2026

Agent Router and Rooms

A single router process managing all standing agent turn loops. Rooms, scheduling, and message delivery.

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Architecture 37 · March 2026

Knowledge Organization

Canonical directory structure, index.md schema, discovery interface, sync protocol, and role assignments.

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Architecture 38 · March 2026

Agent Runner v2 — Constitutional Runtime over ACP

Constitutional runtime over ACP. A Rust daemon implementing governance-gated agent execution.

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Architecture 39 · March 2026

Engagement State — The Third Externalization

The third externalization: tracking multi-session work contexts as first-class state.

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Architecture 40 · March 2026

HAAK Agent Runner: Technical Specification

Technical specification for the HAAK agent runner: policy-gated tools, mandate injection, and BLAKE3 hash-chained audit records.

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Architecture 40 · March 2026

Unified Browser

Merging session browser, engagement viewer, and console into one tool. Four-zone layout.

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Architecture 41 · March 2026

Governance Architecture

The separation principle, trust model, and normative order for a multi-agent system.

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Architecture 41 · March 2026

Browser UX Design

UX specification for the HAAK Browser: home screen, engagement view, agent view, search, chat, mobile.

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Architecture 42 · March 2026

Unified Messaging

One protocol for all inter-agent and human-agent communication across channels.

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Architecture 43 · March 2026

Filix Governance Architecture

A governance topology materialized as a filesystem. Nested governance situations, three layers of truth, and the Grundnorm.

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Architecture 44 · March 2026

Governance Processes

Infrastructure for human decision-making processes — parameterized, AI-facilitated, recorded in a tamper-evident ledger.

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Architecture 44 · March 2026

Engagement Threading

Engagement threading: how engagements are woven across sessions and agents.

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Methods (10)

Composable primitives for recurring workflows.

Methods 17 · March 2026

Interaction Protocols

Syntax conventions: #project, &pattern, @persona, /skill. The four symbols that signal intent.

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Methods 24 · March 2026

Agent Legacy

End-of-life procedure: board post, blog post, autobiography. Three legacies in priority order.

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Methods 47 · March 2026

Change Review

Five-step gate that scales with the system: propose, scope, review, decide, register.

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Methods 48 · March 2026

Commit Governance

Commits are governance acts. Cron-based awareness, tier-scoped approval, historian mediation.

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Methods 50 · March 2026

Web-Native Figures

Two-format discipline: paper PNGs for LaTeX, inline SVGs for landing pages. One-story principle.

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Methods 53 · March 2026

Session Inscription

Agent conversations saved to canonical markdown. Four operations: inscribe, append, export, check.

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Methods 54 · March 2026

Context Surgery

Five operations restructuring conversation history to extend agent life and enable handoff.

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Methods 55 · March 2026

Engagement Tagging

Assigning engagement_id tags to session rounds. Vocabulary discovery, classification, consistency checks.

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Methods 56 · March 2026

Session Ingestion

Three-phase pipeline: skeleton extraction, LLM engagement segmentation, index generation.

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Methods 99 · March 2026

Panel Creation Standard

The panel as atomic unit of scientific argument. Three-stage pipeline, ms_mat.md format, panel identity scheme.

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Strategy (12)

Roadmaps, plans, and publication strategy.

Strategy 19 · March 2026

Filix v1.0 — Architecture Plan

Filix v1.0 architecture plan: Rust core, platform-independent agent governance. Ship August 2026.

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Strategy 22 · March 2026

Situation Mapping Engines

DCG traversal, pattern matching, and situation discovery across the entity graph.

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Strategy 24 · March 2026

HAAK Gateway — Unified Messaging

Unified messaging via HTTP: WhatsApp, Signal, Email. Auto-resolves channel from contacts.

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Strategy 26 · March 2026

Paper Arc 2026 — Map and Plan

The five-paper arc: inscription agents, indexed inconsistency, filix mesh, TTT philosophy, AI governance.

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Strategy 27 · March 2026

Public Presence — Master Plan

Master plan for HAAK’s public web presence, memos, papers, and landing pages.

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Strategy 28 · March 2026

Paper Release Media Strategy

Standard sequence from arXiv to landing page, blog posts, and social thread.

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Strategy 29 · March 2026

Lab Database Architecture

Entity graph for lab management, reporting, and web publishing. Ontological mapping.

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Strategy 30 · March 2026

Strategy 30 — Agent Runner Paper: Constitutional Governance of AI Agents

Constitutional AI governance paper: pre-API policy enforcement, content-addressed ledger. NeurIPS target.

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Strategy 31 · March 2026

Strategy 31 — Agent Runner: Next Steps Roadmap

Four-track roadmap: paper, system hardening, ecosystem, documentation.

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Strategy 32 · March 2026

Filesystem Authority

Filesystem-authoritative architecture: databases as baked build artifacts from markdown sources.

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Strategy 36 · March 2026

36 — Dissolving data/ — governance determines location

Governance determines location. The data/ directory dissolves into governed domain branches.

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Strategy 37 · March 2026

37 — Papers/PDF library consolidation

PDF library consolidation: Zotero, papers.db, and the path to a unified scientific paper store.

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